AlphaFold:安装与使用备忘
官方在 GitHub 给出的源码(https://github.com/deepmind/alphafold)默认是基于 Docker 环境安装的,非 Docker 环境的安装参考:
If you wish to run AlphaFold using Singularity (a common containerization platform on HPC systems) we recommend using some of the third party Singularity setups as linked in #10 or #24.
- 源码地址:https://github.com/deepmind/alphafold
- 非 Docker 环境下安装:https://github.com/kalininalab/alphafold_non_docker
问题一: dm-tree 模块安装失败,需要把 alphafold-2.2.0/requirements.txt 中 dm-tree==0.1.6 调整为 dm-tree==0.1.7! 问题二:
- sh download_db.sh -d \
数据库比较大,需要很长时间下载! - 如提示
**realpath: command not found**
,可以使用**readlink -f**
进行替换!